A complex genome analysis suite
UGENE is a comprehensive genome analysis suite that features multiple sequence alignment and a complex HMM builder and search module.
Here are some key features of "UGENE":
· Multiple sequence alignment using MUSCLE 3 and MUSCLE 4;
· HMM profiles build and search, based on the source of HMMER 2 and HMMER 3;
· PCR Primers design using Primer 3;
· Protein secondary structure prediction using GOR IV and PSIPRED;
· Search for restriction enzymes and integration with REBASE;
· Extremely fast repeat finder;
· Search for transcription factor binding sites using SITECON;
· ORF finder;
· Complete Smith-Waterman algorithm implementation.
· Visual and interactive genome browsing;
· Chromatograms visualization;
· 3D viewer for files in PDB and MMDB formats;
· Multiple sequence alignment editor;
· Easy to use workflow designer for custom computational workflows.
· Complete support of modern multicore processors and SSE instructions;
· Out of the box support of modern GPUs using NVIDIA CUDA and ATI Stream;
· Integrated solutions for Cell Broadband Engine;
· Private solutions for supercomputers and distributed computing.
What's New in This Release
New features & plugins:
· New plugin: cloud support. Running computational workflow on Amazon EC2;
· New plugin: external tool support. Multiple alignment with Mafft and clustal;
· New format supported: Nexus (read & write)
· Advanced scripting capabilities in Workflow Designer;
Minor improvements:
· Added capability to change name of sequence and set name when creating new sequence from text
· Added capability to cancel the insertion of workflow sample
· Items "Lock document for editing" and "Unlock document for editing" are not shown for documents wich can't be changed
· Documents with unknown type (i.e. workflow schema) are not loaded in project
· If during loading of document error occures, document is deleted from project
· Added capability to export sequence with annotations
· Added capability to open several files
· Added capability to remove columns with certain amount of gaps(absolute or relative) in alignment editor
· When annotations are imported from CSV file, they ar...
Here are some key features of "UGENE":
· Multiple sequence alignment using MUSCLE 3 and MUSCLE 4;
· HMM profiles build and search, based on the source of HMMER 2 and HMMER 3;
· PCR Primers design using Primer 3;
· Protein secondary structure prediction using GOR IV and PSIPRED;
· Search for restriction enzymes and integration with REBASE;
· Extremely fast repeat finder;
· Search for transcription factor binding sites using SITECON;
· ORF finder;
· Complete Smith-Waterman algorithm implementation.
· Visual and interactive genome browsing;
· Chromatograms visualization;
· 3D viewer for files in PDB and MMDB formats;
· Multiple sequence alignment editor;
· Easy to use workflow designer for custom computational workflows.
· Complete support of modern multicore processors and SSE instructions;
· Out of the box support of modern GPUs using NVIDIA CUDA and ATI Stream;
· Integrated solutions for Cell Broadband Engine;
· Private solutions for supercomputers and distributed computing.
What's New in This Release
New features & plugins:
· New plugin: cloud support. Running computational workflow on Amazon EC2;
· New plugin: external tool support. Multiple alignment with Mafft and clustal;
· New format supported: Nexus (read & write)
· Advanced scripting capabilities in Workflow Designer;
Minor improvements:
· Added capability to change name of sequence and set name when creating new sequence from text
· Added capability to cancel the insertion of workflow sample
· Items "Lock document for editing" and "Unlock document for editing" are not shown for documents wich can't be changed
· Documents with unknown type (i.e. workflow schema) are not loaded in project
· If during loading of document error occures, document is deleted from project
· Added capability to export sequence with annotations
· Added capability to open several files
· Added capability to remove columns with certain amount of gaps(absolute or relative) in alignment editor
· When annotations are imported from CSV file, they ar...
| Developer: License / Price: Size / OS: Last Updated: | UniPro GPL / FREE 13.2 MB / Windows All August 25th, 2010 |
| Download: | UGENE 1.7.2 |